23 May 2010

Checklist Manifesto

I reviewed this great new book by Atul Gawande here. For the P4 blog, I'll add a few comments realative to P4 Medicine.

Briefly, Atul Gawande's new book is about how simple checklists can bring a surgical team together, reduce infection rates, and save lives.

What does a book ostensibly about surgery have to say about P4 medicine? Well, surgery is personalized, so it's part-way to P4 anyway. But This book addresses issues that are even broader than medicine. Atul's concept of checklists comes straight out of aerospace, particularly pilots' checklists. So the application isn't limited to surgery or even medicine.

In reading this book, one of my thoughts was that many of the same issues with diligent quality control apply to diagnostic tests as well. It's well known that variability in phlebotomy has a dramatically bad effect on many diagnostic tests. Many reference lab tests are quite complex, and especially if technicians don't do these tests every day, it's often easy to make mistakes that can have drastic consequences for people's well-being.

Personalized medicine is going to be personalized in a sense we don't always think of: it will still be performed by people. Personalized medicine means that, in many cases, both patients and clinicians will confront more complex processes. Tools like well-designed checklists are worth understanding, because we'll need them.

29 March 2010

Gene Patent Hullaballo

So Judge Robert Sweet has ruled that Myriad's BRCA1 and BRCA2 gene patents are invalid. Well, you aren't supposed to be able to patent genes anyway. Myriad's patent was on a form of matter: the gene encoded by isolated DNA. Myriad and the US Patent office argued that the sequence of DNA isolated from people wasn't just a "law of nature" and was a patentable invention. Judge Sweet was having none of it. Myriad argued that companies would have no incentive to develop genetic tests if they were unable to patent them. Judge Sweet was unmoved.

I have a hard time sympathizing with Myriad. Myriad had a patent on an aspect of biology that was crucial to the health and well-being of many, many women. (And many men as well.) What did they do? Did they license the test widely to facilitate new research and new innovations? No, they did not. I don't buy Myriad's argument that unpatentability will discourage innovation. Look at companies like Genomic Health that have attracted enormous investment in the private and public capital markets for genetic testing, without a single gene patent to their credit. As far as Myriad's claim that lack of patentability will discourage investment, I don't think the facts support Myriad's position. I think it's more likely that the reverse is true: uncertainty and the trouble caused by recalcitrant players like Myriad have discouraged investment in genetic tests. When you don't know for sure how deep your IP stack is going to be, that's uncertainty. Uncertainty equals risk, and risk drives away investment.

It will be very interesting to see what happens next.

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08 February 2010

Hood: ISB plans to double in size, focus on P4

In an interview with Genomeweb, Dr. Leroy Hood provided an update on ISB's expansion plans, as well as comments on Integrated Diagnostics and the P4 Medical Institute.

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28 December 2009

Celera's Dx Revenues Down

Celera's Q3 2009 diagnostic revenues declined 24% compared with Q3 a year earlier. Celera reports this revenue as lab services, conducted by their Berkeley Heartlab subsidiary. So this is a decline in the premier high-value cardiovascular Dx.

What happened? Celera's 10-Q tells the story. Sample volume slipped, but only a little. The big problem is getting tests paid for:
Revenues from our Lab Services segment for the three months ended September 26, 2009 decreased $5.9 million compared to the three months ended September 27, 2008. The decrease was primarily due to lower reimbursement rates, reflecting the continued impact of denied tests and historical collection activities.
It looks like Celera is facing something of a headwind in getting both payors and patients to pay for ordered tests. This is partly an effect of the economy, but probably not the whole story. Are payors becoming resistant to Berkeley's value proposition? I have no evidence that they are, but if so that's a caution for the whole emerging field of high-value Dx. Cheap tests with limited predictive value may be better than nothing, but if you are charging the big bucks, payors probably will keep the pressure on you to deliver measurable results.

Or maybe not. That seems an obvious lesson to draw from Celera's results, but there are other possible explanations.

To grow the business, Celera is licensing several US labs to perform some of Berkeley's tests. These deals involve several different tests, and Celera's payment issues may not relate to any of these licensed tests. It will be nonetheless interesting to see how these deals work out.

(Full disclosure: I work for a company developing cardiovascular diagnostics.)

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18 December 2009

Breast Cancer Fund: Are Mammograms So Great?

In the 12/6/09 San Jose Mercury News, the Breast Cancer Fund's Jeanne Rizzo writes:
A blanket guideline for mammography is the antithesis of personalized medicine and belies the complexity of breast cancer. The reliance on mammography as a tool for detection also undermines the need for directing our national health resources toward the development of noninvasive alternatives that truly address prevention.
Rizzo makes an important point: lost in the debate over mammography for women in their 40's is the unfortunate fact that x-ray, our front-line diagnostic for breast cancer, is carcinogenic. Despite dramatic progress, our tools for diagnosing and treating breast cancer are still barbaric compared to what we should want women to have available to them.

14 December 2009

Report: The New Science of Personalized Medicine

PriceWaterhouseCoopers has a new report out on Personalized Medicine, which is described explicitly in terms of P4 medicine, although the authors concede that Personalized Medicine is a fluid concept, with many definitions.

The report sizes the Personalized Medicine market at $232 billion, with an 11% annual growth rate. Yes, a quarter of a trillion dollars, although most of that money is in nutrition and wellness services that some people would place outside of "medicine."

The core Dx and theranostic applications of personalized medicine are a still impressive $24 billion market growing at 10% per year. The report breaks this down as as follows:
  • Esoteric lab services $6B, 10% CAGR
  • Esoteric tests, including molecular diagnostics: $5B, 13% CAGR
  • Target therapeutics $13B, 9% CAGR
The report is particularly favorable towards molecular diagnostics. The report acknowledges that molecular diagnostics are expensive, but notes that payors will pay for them if the tests improve patient outcomes, especially if the tests identify patients who don't need expensive therapies.

This is a nice report with a good data-to-speculation ratio, all the more impressive in a free report. Give it a read. It's a good source of quotes for business plans, and you'll probably learn something too.

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Ignite Institute

The Ignite Institute is a non-profit personalized medicine institute in Virgina. Incorporating non-profit, academic, for-profit, and venture philanthropy. There is also a key collaboration with Inova Health System, giving Ignite a patient population to learn about and work with. Ignite sounds complicated but promissing.

In November, Virginia comitted $200 million to Ignite. That's a big bet on P4, and enough to get something interesting done. It will be interesting to see what Ignite is able to accomplish

27 November 2009

Finding Breast Cancer That Isn't There

The US Preventative Services Task Force (USPSTF) on Breast Cancer has been big news. Many people don't seem to understand how more diagnosis can be bad, and assume this is a nefarious plan to save money at the expense of women's health.

What the USPSTF recommendations say is that women who want a mammogram should get it, but unless the woman is eager for a mammogram or is at high risk, women under 50 should not get mammograms, and regardless, every two years is often enough for mammaography.

USPSTF reserved their harshest evaluation for manual breast exams, both self-exam and exams performed by a clinician. USPSTF found that such exams don't save lives, and lead to needless suffering.

I'm not an oncologist, and medical knowledge of cancer is quite incomplete, but I can explain why over-diagnosing breast cancer is harmful. From a treatment standpoint, there are three kinds of breast cancers:
  • Slow growing cancers that are relatively easily treated, and may not cause a woman any medical problem were they to go undetected and untreated.
  • Intermediate cancers that are likely to eventually become metastatic and deadly if untreated.
  • Agressive cancers that grow very rapidly after appearance and are often quickly lethal.
Most of the women helped by mammograms are in the intermediate category. Their cancer will probably kill them if undetected, but if cancer is detected and treated in time, these women stand a high chance of survival. The problem is, there aren't very many women between the ages of 40 and 50 in this situation. What makes this state of affairs worse is that, both individually and in aggregate, early diagnosis of women with either slow-growing or aggressive cancer looks like progress, but doesn't necessarily make anyone live any longer.
  • Women with slow-growing cancer are probably going to survive anyway, and some would never be diagnosed. When these women started being diagnosed with cancer, it caused the illusion of improved breast cancer survival. In the past, these women were surviving breast cancer for long periods without being diagnosed or treated. Also in this situation are women who are diagnosed with breast cancer but do not actually have cancer. That is, they are false positives. For women in either of these situations, diagnosis doesn't much affect or even reduces their life expectancy, because cancer treatment is somewhat dangerous. They may receive no benefit in return for this risk.
  • Women with untreatable, aggressive cancer aren't much helped by diagnosis, because diagnosis doesn't lead to a treatment that benefits them very much. But as with slow-growing cancer, even if detection doesn't help these women live longer, it causes an illusion of improved survival, because these women tend to get their diagnosis earlier, even if they don't live longer.
Finally, there are risks to women who have negative mammograms, because mammograms require radiation. Each individual mammogram isn't very risky, but a woman following past recommendations will receive ten radiation doses to a radiation-sensitive tissue that they would otherwise avoid.

The USPSTF's analysis is complex, involving review of many complicated yet imperfect studies and meta-analysis with a half-dozen statistical models. I reviewed the USPSTF recommendations, but I obviously didn't try to duplicate their entire analysis. I lack both the time and the qualifications to repeat their work. But I find the USPSTF recommendations highly credible, because their conclusions are logical and well supported, and because other groups have been reaching similar concusions for many years.

Does that mean cancer diagnostics are a bad idea? No, of course not. Some of the improved survival from mammography has been an illusion, but mammography really does save lives. The problem with cancer screening is the problem with Dx in any population with a low incidence of disease: in populations where few people actually have the disease, a diagnostic has to be very, very good to have both low false positives and false negatives. If a significant number of people who get a postitive diagnosis don't benefit from treatment, the challenge is even worse. Over the next decade or two, diagnostics are going to revolutionize medicine, but many of the victories are going to be hard fought. USPSTF is telling us that women need to pick their battles with mammography. At some point, a diagnostic approach that works for women in their 40's will be developed, but we don't have it yet.

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06 November 2009

Zerhouni: Precision Medicine

Elias Zerhouni, former head of the NIH, spoke at the annual meeting of the Washington Biotechnology & Biomedical Association. Zerhouni outlined what he called "Precision Medicine," which he described in terms of four P's: Personalized, Predictive, Participatory, and Preemptive.

Preemptive is a different P than some people use. (Everybody seems to agree that we need 4 P's, but don't always agree on which P's we need.) What does Zerhouni mean by preemptive? He said that new medicine must anticipate and interrupt the disease process before the patient has any real disease burden.

These 4 P's constitute Precision Medicine according to Zerhouni. What he means by precision is understanding the multiple means by which a single disease phenotype can arise, and therefore knowing which treatments are likely to be effictive.

I have never heard Zerhouni speak in person before. He was an engaging speaker, covering broad policy issues as well as scientific detail.

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20 October 2009

Integrated Dx Puts It Together

Integrated Diagnostics, Lee Hood's latest company, has finally closed a venture round, and it's an impressive one: $30 million. This company is sure to shine a brighter light on Dx.

Originally, Integrated was described as a cancer Dx company. Now the focus seems to have grown even broader, to possibly include Alzheimer's and other diseases. The basic idea appears the same as with Hood's earlier company Homestead: high-throughput screening of blood markers from organ-specific secreted proteins.

Integrated claims to be 3-4 years from a commercial Dx product, which is an ambitious goal to say the least. Integrated has so far been rather secretive, but they should be fun to watch all the same.

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